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NPTX1 neuronal pentraxin 1 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112410526, updated on 15-Mar-2024

Summary

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Gene symbol
NPTX1
Gene description
neuronal pentraxin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020174923.1 (10877139..10886883, complement)

NW_020174923.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 213 Neighboring gene endonuclease V Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene regulatory associated protein of MTOR complex 1 Neighboring gene charged multivesicular body protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020174923 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axonogenesis involved in innervation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal pentraxin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020174923.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    10877139..10886883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024761230.1 → XP_024616998.1  neuronal pentraxin-1

    UniProtKB/TrEMBL
    A0A341CQC2
    Conserved Domains (2) summary
    smart00159
    Location:222 → 428
    PTX; Pentraxin / C-reactive protein / pentaxin family
    COG1196
    Location:52 → 221
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version

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