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HLF HLF transcription factor, PAR bZIP family member [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112408110, updated on 15-Mar-2024

Summary

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Gene symbol
HLF
Gene description
HLF transcription factor, PAR bZIP family member
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020174560.1 (1273703..1328184)

NW_020174560.1Genomic Context describing neighboring genes Neighboring gene target of myb1 like 1 membrane trafficking protein Neighboring gene cytochrome c oxidase assembly protein COX11, mitochondrial Neighboring gene syntaxin binding protein 4 Neighboring gene U6 spliceosomal RNA Neighboring gene monocyte to macrophage differentiation associated

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020174560 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatic leukemia factor
Names
HLF, PAR bZIP transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020174560.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    1273703..1328184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024757670.1 → XP_024613438.1  hepatic leukemia factor isoform X1

    UniProtKB/TrEMBL
    A0A341CFY4
    Conserved Domains (1) summary
    cd14695
    Location:226 → 284
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

  2. XM_024757671.1 → XP_024613439.1  hepatic leukemia factor isoform X2

    UniProtKB/TrEMBL
    A0A341CFP5
    Conserved Domains (2) summary
    cd14695
    Location:224 → 283
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
    pfam09606
    Location:95 → 166
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  3. XM_024757672.1 → XP_024613440.1  hepatic leukemia factor isoform X3

    UniProtKB/TrEMBL
    A0A341CFN5
Nucleotide Protein
Heading Accession and Version

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