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OCLN occludin [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112407050, updated on 15-Mar-2024

Summary

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Gene symbol
OCLN
Gene description
occludin
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020174368.1 (1257821..1304486, complement)

NW_020174368.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112407035 Neighboring gene general transcription factor IIH subunit 2 Neighboring gene U6 spliceosomal RNA Neighboring gene MARVEL domain containing 2 Neighboring gene RAD17 checkpoint clamp loader component

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020174368 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
occludin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020174368.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    1257821..1304486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024756195.1 → XP_024611963.1  occludin isoform X1

    UniProtKB/TrEMBL
    A0A341CBK7
    Conserved Domains (2) summary
    pfam01284
    Location:57 → 261
    MARVEL; Membrane-associating domain
    pfam07303
    Location:418 → 517
    Occludin_ELL; Occludin homology domain

  2. XM_024756197.1 → XP_024611965.1  occludin isoform X1

    UniProtKB/TrEMBL
    A0A341CBK7
    Conserved Domains (2) summary
    pfam01284
    Location:57 → 261
    MARVEL; Membrane-associating domain
    pfam07303
    Location:418 → 517
    Occludin_ELL; Occludin homology domain

  3. XM_024756194.1 → XP_024611962.1  occludin isoform X1

    UniProtKB/TrEMBL
    A0A341CBK7
    Conserved Domains (2) summary
    pfam01284
    Location:57 → 261
    MARVEL; Membrane-associating domain
    pfam07303
    Location:418 → 517
    Occludin_ELL; Occludin homology domain

  4. XM_024756198.1 → XP_024611966.1  occludin isoform X1

    UniProtKB/TrEMBL
    A0A341CBK7
    Conserved Domains (2) summary
    pfam01284
    Location:57 → 261
    MARVEL; Membrane-associating domain
    pfam07303
    Location:418 → 517
    Occludin_ELL; Occludin homology domain

  5. XM_024756196.1 → XP_024611964.1  occludin isoform X1

    UniProtKB/TrEMBL
    A0A341CBK7
    Conserved Domains (2) summary
    pfam01284
    Location:57 → 261
    MARVEL; Membrane-associating domain
    pfam07303
    Location:418 → 517
    Occludin_ELL; Occludin homology domain

  6. XM_024756200.1 → XP_024611968.1  occludin isoform X2

    UniProtKB/TrEMBL
    A0A341CC05
    Conserved Domains (1) summary
    pfam07303
    Location:169 → 268
    Occludin_ELL; Occludin homology domain
Nucleotide Protein
Heading Accession and Version

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