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PAX6 paired box 6 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112404567, updated on 15-Mar-2024

Summary

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Gene symbol
PAX6
Gene description
paired box 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020173929.1 (530888..553168, complement)

NW_020173929.1Genomic Context describing neighboring genes Neighboring gene cell death activator CIDE-B pseudogene Neighboring gene inner mitochondrial membrane peptidase subunit 1 Neighboring gene elongator acetyltransferase complex subunit 4 Neighboring gene quinone oxidoreductase-like Neighboring gene reticulocalbin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020173929 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box protein Pax-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020173929.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    530888..553168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024752596.1 → XP_024608364.1  paired box protein Pax-6 isoform X3

    UniProtKB/TrEMBL
    A0A341C1H6
    Conserved Domains (2) summary
    smart00351
    Location:4 → 128
    PAX; Paired Box domain
    pfam00046
    Location:214 → 267
    Homeobox; Homeobox domain

  2. XM_024752597.1 → XP_024608365.1  paired box protein Pax-6 isoform X4

    UniProtKB/TrEMBL
    A0A341C0G0
    Conserved Domains (2) summary
    pfam00046
    Location:147 → 200
    Homeobox; Homeobox domain
    cl21459
    Location:4 → 56
    HTH; Helix-turn-helix domains

  3. XM_024752595.1 → XP_024608363.1  paired box protein Pax-6 isoform X2

    UniProtKB/TrEMBL
    A0A341C201
    Conserved Domains (2) summary
    smart00351
    Location:4 → 142
    PAX; Paired Box domain
    pfam00046
    Location:228 → 281
    Homeobox; Homeobox domain

  4. XM_024752594.1 → XP_024608362.1  paired box protein Pax-6 isoform X1

    UniProtKB/TrEMBL
    A0A341C368
    Conserved Domains (2) summary
    smart00351
    Location:61 → 199
    PAX; Paired Box domain
    pfam00046
    Location:285 → 337
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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