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CD44 CD44 molecule (IN blood group) [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112404541, updated on 15-Mar-2024

Summary

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Gene symbol
CD44
Gene description
CD44 molecule (IN blood group)
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020173929.1 (3397746..3485175)

NW_020173929.1Genomic Context describing neighboring genes Neighboring gene APAF1 interacting protein Neighboring gene pyruvate dehydrogenase complex component X Neighboring gene solute carrier family 1 member 2 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020173929 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of macrophage migration inhibitory factor receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CD44 antigen
Names
CD44 molecule (Indian blood group)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020173929.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    3397746..3485175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024752550.1 → XP_024608318.1  CD44 antigen isoform X15

    UniProtKB/TrEMBL
    A0A341C1V9
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  2. XM_024752536.1 → XP_024608304.1  CD44 antigen isoform X1

    UniProtKB/TrEMBL
    A0A341C1B4
    Conserved Domains (2) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
    pfam01611
    Location:196 → 413
    Filo_glycop; Filovirus glycoprotein

  3. XM_024752537.1 → XP_024608305.1  CD44 antigen isoform X2

    UniProtKB/TrEMBL
    A0A341C0A2
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  4. XM_024752538.1 → XP_024608306.1  CD44 antigen isoform X3

    UniProtKB/TrEMBL
    A0A341C0G6
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  5. XM_024752539.1 → XP_024608307.1  CD44 antigen isoform X4

    UniProtKB/TrEMBL
    A0A341C316
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  6. XM_024752540.1 → XP_024608308.1  CD44 antigen isoform X5

    UniProtKB/TrEMBL
    A0A341C1V1
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  7. XM_024752541.1 → XP_024608309.1  CD44 antigen isoform X6

    UniProtKB/TrEMBL
    A0A341C1B9
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  8. XM_024752542.1 → XP_024608310.1  CD44 antigen isoform X7

    UniProtKB/TrEMBL
    A0A341C0A4
    Conserved Domains (2) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
    pfam01611
    Location:196 → 413
    Filo_glycop; Filovirus glycoprotein

  9. XM_024752543.1 → XP_024608311.1  CD44 antigen isoform X8

    UniProtKB/TrEMBL
    A0A341C0H1
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  10. XM_024752544.1 → XP_024608312.1  CD44 antigen isoform X9

    UniProtKB/TrEMBL
    A0A341C320
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  11. XM_024752545.1 → XP_024608313.1  CD44 antigen isoform X10

    UniProtKB/TrEMBL
    A0A341C1V6
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  12. XM_024752546.1 → XP_024608314.1  CD44 antigen isoform X11

    UniProtKB/TrEMBL
    A0A341C1C6
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  13. XM_024752547.1 → XP_024608315.1  CD44 antigen isoform X12

    UniProtKB/TrEMBL
    A0A341C0B0
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  14. XM_024752548.1 → XP_024608316.1  CD44 antigen isoform X13

    UniProtKB/TrEMBL
    A0A341C0H6
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...

  15. XM_024752549.1 → XP_024608317.1  CD44 antigen isoform X14

    UniProtKB/TrEMBL
    A0A341C324
    Conserved Domains (1) summary
    cd03516
    Location:26 → 170
    Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
Nucleotide Protein
Heading Accession and Version

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