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APBB3 amyloid beta precursor protein binding family B member 3 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112404319, updated on 15-Mar-2024

Summary

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Gene symbol
APBB3
Gene description
amyloid beta precursor protein binding family B member 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020173922.1 (5522401..5528530, complement)

NW_020173922.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and KH domain-containing protein 1 Neighboring gene U6 spliceosomal RNA Neighboring gene steroid receptor RNA activator 1 Neighboring gene SLC35A4 upstream open reading frame protein Neighboring gene uncharacterized LOC112404318 Neighboring gene solute carrier family 35 member A4 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020173922 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amyloid-beta A4 precursor protein-binding family B member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020173922.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    5522401..5528530 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024752177.1 → XP_024607945.1  amyloid-beta A4 precursor protein-binding family B member 3 isoform X3

    UniProtKB/TrEMBL
    A0A341BZ79
    Conserved Domains (3) summary
    smart00456
    Location:41 → 72
    WW; Domain with 2 conserved Trp (W) residues
    cd01271
    Location:294 → 424
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:127 → 265
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain

  2. XM_024752176.1 → XP_024607944.1  amyloid-beta A4 precursor protein-binding family B member 3 isoform X2

    UniProtKB/TrEMBL
    A0A341C0A6
    Conserved Domains (2) summary
    cd01271
    Location:300 → 430
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:133 → 271
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain

  3. XM_024752179.1 → XP_024607947.1  amyloid-beta A4 precursor protein-binding family B member 3 isoform X5

    UniProtKB/TrEMBL
    A0A341C212
    Conserved Domains (3) summary
    smart00456
    Location:30 → 61
    WW; Domain with 2 conserved Trp (W) residues
    cd01271
    Location:283 → 413
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:116 → 254
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain

  4. XM_024752180.1 → XP_024607948.1  amyloid-beta A4 precursor protein-binding family B member 3 isoform X6

    UniProtKB/TrEMBL
    A0A341C0V8
    Conserved Domains (3) summary
    smart00456
    Location:30 → 61
    WW; Domain with 2 conserved Trp (W) residues
    cd01271
    Location:281 → 411
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:116 → 252
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain

  5. XM_024752175.1 → XP_024607943.1  amyloid-beta A4 precursor protein-binding family B member 3 isoform X1

    UniProtKB/TrEMBL
    A0A341C0V1
    Conserved Domains (3) summary
    smart00456
    Location:59 → 90
    WW; Domain with 2 conserved Trp (W) residues
    cd01271
    Location:310 → 440
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:145 → 281
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain

  6. XM_024752178.1 → XP_024607946.1  amyloid-beta A4 precursor protein-binding family B member 3 isoform X4

    UniProtKB/TrEMBL
    A0A341BZB5
    Conserved Domains (2) summary
    cd01271
    Location:290 → 420
    PTB2_Fe65; Fe65 C-terminal Phosphotyrosine-binding (PTB) domain
    cd01272
    Location:123 → 261
    PTB1_Fe65; Fe65 N-terminal Phosphotyrosine-binding (PTB) domain
Nucleotide Protein
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