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RAPSN receptor associated protein of the synapse [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112402415, updated on 15-Mar-2024

Summary

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Gene symbol
RAPSN
Gene description
receptor associated protein of the synapse
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020173674.1 (12759457..12769220)

NW_020173674.1Genomic Context describing neighboring genes Neighboring gene CUGBP Elav-like family member 1 Neighboring gene U6 spliceosomal RNA Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial pseudogene Neighboring gene proteasome 26S subunit, ATPase 3 Neighboring gene solute carrier family 39 member 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020173674 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-membrane adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
43 kDa receptor-associated protein of the synapse

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020173674.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    12759457..12769220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024749330.1 → XP_024605098.1  43 kDa receptor-associated protein of the synapse isoform X1

    UniProtKB/TrEMBL
    A0A341BTF3
    Conserved Domains (5) summary
    COG0457
    Location:9 → 239
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:127 → 151
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:249 → 318
    TPR_12; Tetratricopeptide repeat
    cd16478
    Location:360 → 404
    RING-H2_Rapsyn; RING finger, H2 subclass, found in 43 kDa receptor-associated protein of the synapse (Rapsyn) and similar proteins
    cl24038
    Location:1 → 80
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  2. XM_024749331.1 → XP_024605099.1  43 kDa receptor-associated protein of the synapse isoform X2

    UniProtKB/TrEMBL
    A0A341BSB5
    Conserved Domains (4) summary
    COG0457
    Location:9 → 239
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:127 → 151
    TPR; TPR repeat [structural motif]
    cd16478
    Location:301 → 345
    RING-H2_Rapsyn; RING finger, H2 subclass, found in 43 kDa receptor-associated protein of the synapse (Rapsyn) and similar proteins
    cl24038
    Location:1 → 80
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Nucleotide Protein
Heading Accession and Version

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