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EPHB1 EPH receptor B1 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112400468, updated on 11-Apr-2024

Summary

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Gene symbol
EPHB1
Gene description
EPH receptor B1
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020173375.1 (2329639..2755015, complement)

NW_020173375.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2 regulatory subunit B''alpha Neighboring gene uncharacterized LOC112400473 Neighboring gene kyphoscoliosis peptidase Neighboring gene centrosomal protein 63 Neighboring gene anaphase promoting complex subunit 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020173375 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane-ephrin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ephrin type-B receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020173375.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    2329639..2755015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024746227.1 → XP_024601995.1  ephrin type-B receptor 1

    UniProtKB/TrEMBL
    A0A341BGT9
    Conserved Domains (6) summary
    cd05065
    Location:614 → 882
    PTKc_EphR_B; Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors
    cd09551
    Location:908 → 975
    SAM_EPH-B1; SAM domain of EPH-B1 subfamily of tyrosine kinase receptors
    cd10476
    Location:20 → 195
    EphR_LBD_B1; Ligand Binding Domain of Ephrin type-B Receptor 1
    cd00063
    Location:323 → 429
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:435 → 517
    fn3; Fibronectin type III domain
    pfam14575
    Location:546 → 614
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
Nucleotide Protein
Heading Accession and Version

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