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FUBP1 far upstream element binding protein 1 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112392729, updated on 15-Mar-2024

Summary

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Gene symbol
FUBP1
Gene description
far upstream element binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020185328.1 (10477456..10511952, complement)

NW_020185328.1Genomic Context describing neighboring genes Neighboring gene 2-iminobutanoate/2-iminopropanoate deaminase pseudogene Neighboring gene mitoguardin 1 Neighboring gene nexilin F-actin binding protein Neighboring gene U6 spliceosomal RNA Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene U6 spliceosomal RNA Neighboring gene GIPC PDZ domain containing family member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020185328 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
far upstream element-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020185328.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    10477456..10511952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024734544.1 → XP_024590312.1  far upstream element-binding protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A341AME5
    Conserved Domains (5) summary
    pfam09005
    Location:601 → 621
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:97 → 171
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:185 → 254
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:275 → 342
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:375 → 446
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  2. XM_024734535.1 → XP_024590303.1  far upstream element-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A341AL85
    Conserved Domains (2) summary
    pfam09005
    Location:645 → 665
    DUF1897; Domain of unknown function (DUF1897)
    cl00098
    Location:118 → 192
    KH-I; K homology (KH) RNA-binding domain, type I

  3. XM_024734534.1 → XP_024590302.1  far upstream element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A341AMD8
    Conserved Domains (5) summary
    pfam09005
    Location:646 → 666
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:119 → 193
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:207 → 276
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:297 → 364
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:397 → 468
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  4. XM_024734539.1 → XP_024590307.1  far upstream element-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A341AME1
    Conserved Domains (2) summary
    pfam09005
    Location:624 → 644
    DUF1897; Domain of unknown function (DUF1897)
    cl00098
    Location:97 → 171
    KH-I; K homology (KH) RNA-binding domain, type I

  5. XM_024734538.1 → XP_024590306.1  far upstream element-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A341AHV4
    Conserved Domains (2) summary
    pfam09005
    Location:625 → 645
    DUF1897; Domain of unknown function (DUF1897)
    cl00098
    Location:98 → 172
    KH-I; K homology (KH) RNA-binding domain, type I

  6. XM_024734536.1 → XP_024590304.1  far upstream element-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A341AKB8
    Conserved Domains (5) summary
    pfam09005
    Location:643 → 663
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:119 → 193
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:207 → 276
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:297 → 364
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:397 → 468
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  7. XM_024734537.1 → XP_024590305.1  far upstream element-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A341AI78
    Conserved Domains (5) summary
    pfam09005
    Location:626 → 646
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:119 → 193
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:207 → 276
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:297 → 364
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:397 → 468
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  8. XM_024734541.1 → XP_024590309.1  far upstream element-binding protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A341AKC3
    Conserved Domains (5) summary
    pfam09005
    Location:604 → 624
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:97 → 171
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:185 → 254
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:275 → 342
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:375 → 446
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  9. XM_024734543.1 → XP_024590311.1  far upstream element-binding protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A341AHV9
    Conserved Domains (5) summary
    pfam09005
    Location:602 → 622
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:98 → 172
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:186 → 255
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:276 → 343
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:376 → 447
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

  10. XM_024734540.1 → XP_024590308.1  far upstream element-binding protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A341AL89
    Conserved Domains (5) summary
    pfam09005
    Location:623 → 643
    DUF1897; Domain of unknown function (DUF1897)
    cd22478
    Location:119 → 193
    KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22481
    Location:207 → 276
    KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22484
    Location:297 → 364
    KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
    cd22487
    Location:397 → 468
    KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

RNA

  1. XR_003001747.1 RNA Sequence

  2. XR_003001746.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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