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CDH11 cadherin 11 [ Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise) ]

Gene ID: 112392158, updated on 15-Mar-2024

Summary

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Gene symbol
CDH11
Gene description
cadherin 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Neophocaena asiaeorientalis asiaeorientalis (sub-species: asiaeorientalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Neophocaena
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Neophocaena_asiaeorientalis_V1 (GCF_003031525.1) Unplaced Scaffold NW_020172445.1 (3392855..3534066)

NW_020172445.1Genomic Context describing neighboring genes Neighboring gene cadherin 5 Neighboring gene ferritin light chain pseudogene Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene small nuclear ribonucleoprotein Sm D2 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020172445 Unplaced Scaffold Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neophocaena asiaeorientalis asiaeorientalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

Genomic

  1. NW_020172445.1 Reference Neophocaena_asiaeorientalis_V1 Primary Assembly

    Range
    3392855..3534066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024733711.1 → XP_024589479.1  cadherin-11 isoform X1

    UniProtKB/TrEMBL
    A0A341AHY4
    Conserved Domains (3) summary
    cd11304
    Location:163 → 264
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:79 → 157
    CA; Cadherin repeats
    pfam01049
    Location:641 → 789
    Cadherin_C; Cadherin cytoplasmic region

  2. XM_024733718.1 → XP_024589486.1  cadherin-11 isoform X1

    UniProtKB/TrEMBL
    A0A341AHY4
    Conserved Domains (3) summary
    cd11304
    Location:163 → 264
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:79 → 157
    CA; Cadherin repeats
    pfam01049
    Location:641 → 789
    Cadherin_C; Cadherin cytoplasmic region

  3. XM_024733724.1 → XP_024589492.1  cadherin-11 isoform X2

    UniProtKB/TrEMBL
    A0A341AK31
    Conserved Domains (3) summary
    cd11304
    Location:37 → 138
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:388 → 472
    CA; Cadherin repeats
    pfam01049
    Location:515 → 663
    Cadherin_C; Cadherin cytoplasmic region
Nucleotide Protein
Heading Accession and Version

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