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sdhB L-serine dehydratase beta chain [ Oscillibacter valericigenes Sjm18-20 ]

Gene ID: 11236989, updated on 6-Jul-2014
Gene symbol
sdhB
Gene description
L-serine dehydratase beta chain
Locus tag
OBV_20380
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oscillibacter valericigenes Sjm18-20 (strain: Sjm18-20)
Lineage
Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter
Sequence:
NC_016048.1 (1928185..1928853)

NC_016048.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene putative hydrolase Neighboring gene L-serine dehydratase alpha chain Neighboring gene hypothetical protein

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Biosynthesis of amino acids, organism-specific biosystem (from KEGG)
    Biosynthesis of amino acids, organism-specific biosystemThis map presents a modular architecture of the biosynthesis pathways of twenty amino acids, which may be viewed as consisting of the core part and its extensions. The core part is the KEGG module fo...
  • Biosynthesis of amino acids, conserved biosystem (from KEGG)
    Biosynthesis of amino acids, conserved biosystemThis map presents a modular architecture of the biosynthesis pathways of twenty amino acids, which may be viewed as consisting of the core part and its extensions. The core part is the KEGG module fo...
  • Biosynthesis of secondary metabolites, organism-specific biosystem (from KEGG)
    Biosynthesis of secondary metabolites, organism-specific biosystem
    Biosynthesis of secondary metabolites
  • Carbon metabolism, organism-specific biosystem (from KEGG)
    Carbon metabolism, organism-specific biosystemCarbon metabolism is the most basic aspect of life. This map presents an overall view of central carbon metabolism, where the number of carbons is shown for each compound denoted by a circle, excludi...
  • Carbon metabolism, conserved biosystem (from KEGG)
    Carbon metabolism, conserved biosystemCarbon metabolism is the most basic aspect of life. This map presents an overall view of central carbon metabolism, where the number of carbons is shown for each compound denoted by a circle, excludi...
  • Cysteine and methionine metabolism, organism-specific biosystem (from KEGG)
    Cysteine and methionine metabolism, organism-specific biosystemCysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted f...
  • Cysteine and methionine metabolism, conserved biosystem (from KEGG)
    Cysteine and methionine metabolism, conserved biosystemCysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted f...
  • Glycine, serine and threonine metabolism, organism-specific biosystem (from KEGG)
    Glycine, serine and threonine metabolism, organism-specific biosystemSerine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In ...
  • Glycine, serine and threonine metabolism, conserved biosystem (from KEGG)
    Glycine, serine and threonine metabolism, conserved biosystemSerine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In ...
  • Metabolic pathways, organism-specific biosystem (from KEGG)
    Metabolic pathways, organism-specific biosystem
    Metabolic pathways
Names
L-serine dehydratase beta chain
YP_004881742.1
  • protein synonym:L-serine deaminase

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016048.1 

    Range
    1928185..1928853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_004881742.1 L-serine dehydratase beta chain [Oscillibacter valericigenes Sjm18-20]

    See proteins identical to YP_004881742.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G4L1L9
    Conserved Domains (3) summary
    TIGR00719
    Location:4208
    Blast Score: 472
    sda_beta; L-serine dehydratase, iron-sulfur-dependent, beta subunit
    cd04903
    Location:147216
    Blast Score: 178
    ACT_LSD; C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit
    pfam03315
    Location:11136
    Blast Score: 358
    SDH_beta; Serine dehydratase beta chain

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