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XRN1 5'-3' exoribonuclease 1 [ Desmodus rotundus (common vampire bat) ]

Gene ID: 112320571, updated on 30-Mar-2024

Summary

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Gene symbol
XRN1
Gene description
5'-3' exoribonuclease 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Desmodus rotundus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Desmodontinae; Desmodus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
42
Annotation release Status Assembly Chr Location
RS_2023_02 current HLdesRot8A (GCF_022682495.1) 2 NC_071388.1 (105818055..105986221)
101 previous assembly ASM294091v2 (GCF_002940915.1) Unplaced Scaffold NW_020093695.1 (25120453..25299521)

Chromosome 2 - NC_071388.1Genomic Context describing neighboring genes Neighboring gene ATR serine/threonine kinase Neighboring gene serum response factor-binding protein 1-like Neighboring gene Y-box-binding protein 1-like Neighboring gene 60S ribosomal protein L34-like Neighboring gene U5 spliceosomal RNA Neighboring gene 40S ribosomal protein S10-like Neighboring gene elongation factor 1-alpha 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5'-3' exoribonuclease 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022682495.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HLdesRot8A Primary Assembly

Genomic

  1. NC_071388.1 Reference HLdesRot8A Primary Assembly

    Range
    105818055..105986221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053918514.1 → XP_053774489.1  5'-3' exoribonuclease 1 isoform X1

  2. XM_053918515.1 → XP_053774490.1  5'-3' exoribonuclease 1 isoform X2

  3. XM_053918516.1 → XP_053774491.1  5'-3' exoribonuclease 1 isoform X3

RNA

  1. XR_008426157.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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