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LOC112250923 N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase) [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112250923, updated on 7-Dec-2023

Summary

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Gene symbol
LOC112250923
Gene description
N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)
See related
EnsemblRapid:ENSOTSG00005042671
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
npl
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Genomic context

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Location:
chromosome: LG05
Exon count:
12
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG05 NC_056433.1 (56391839..56402705)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 5 NC_037101.1 (59883933..59894946)

Linkage Group LG05 - NC_056433.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C1orf21 homolog Neighboring gene ER degradation-enhancing alpha-mannosidase-like protein 3 Neighboring gene cysteine-rich motor neuron 1 protein Neighboring gene SEC22 homolog B, vesicle trafficking protein b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-hydroxy-tetrahydrodipicolinate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables N-acetylneuraminate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylneuraminate lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056433.1 Reference Otsh_v2.0 Primary Assembly

    Range
    56391839..56402705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024421482.2 → XP_024277250.1  N-acetylneuraminate lyase isoform X3

    UniProtKB/TrEMBL
    A0A8C8JB09, A0A8C8JB84
    Related
    ENSOTSP00005090869.2, ENSOTST00005098622.2
    Conserved Domains (1) summary
    cl28880
    Location:10 → 274
    Aldolase_Class_I; Class I aldolases

  2. XM_024421483.2 → XP_024277251.1  N-acetylneuraminate lyase isoform X3

    UniProtKB/TrEMBL
    A0A8C8JB09, A0A8C8JB84
    Conserved Domains (1) summary
    cl28880
    Location:10 → 274
    Aldolase_Class_I; Class I aldolases

  3. XM_024421481.2 → XP_024277249.1  N-acetylneuraminate lyase isoform X2

    UniProtKB/TrEMBL
    A0A8C8JB09
    Conserved Domains (1) summary
    cl28880
    Location:21 → 284
    Aldolase_Class_I; Class I aldolases

  4. XM_024421480.2 → XP_024277248.1  N-acetylneuraminate lyase isoform X1

    UniProtKB/TrEMBL
    A0A8C8JB09
    Conserved Domains (1) summary
    cl28880
    Location:21 → 285
    Aldolase_Class_I; Class I aldolases
Nucleotide Protein
Heading Accession and Version

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