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LOC112248447 calcineurin-binding protein cabin-1 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112248447, updated on 7-Dec-2023

Summary

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Gene symbol
LOC112248447
Gene description
calcineurin-binding protein cabin-1
See related
EnsemblRapid:ENSOTSG00005037456
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
cabin1
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Genomic context

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Location:
chromosome: LG04
Exon count:
39
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG04 NC_056432.1 (27210323..27271633)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 4 NC_037100.1 (25146469..25207637)

Linkage Group LG04 - NC_056432.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA49 Neighboring gene neurofilament light polypeptide Neighboring gene T-box protein VegT-like Neighboring gene neuropeptide Y receptor type 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcineurin-binding protein cabin-1
Names
calcineurin binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056432.1 Reference Otsh_v2.0 Primary Assembly

    Range
    27210323..27271633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024417473.2 → XP_024273241.1  calcineurin-binding protein cabin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C8J6F5, A0A8C8JC68
    Conserved Domains (4) summary
    COG0457
    Location:34 → 210
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    cd13839
    Location:2219 → 2253
    MEF2_binding; Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1
    sd00006
    Location:90 → 118
    TPR; TPR repeat [structural motif]
    cl25496
    Location:1448 → 1604
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_024417475.2 → XP_024273243.1  calcineurin-binding protein cabin-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C8J2Y6, A0A8C8JC68
    Related
    ENSOTSP00005088955.1, ENSOTST00005096570.2
    Conserved Domains (4) summary
    COG0457
    Location:34 → 210
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    cd13839
    Location:2197 → 2231
    MEF2_binding; Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1
    sd00006
    Location:90 → 118
    TPR; TPR repeat [structural motif]
    cl25496
    Location:1426 → 1582
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. XM_024417474.2 → XP_024273242.1  calcineurin-binding protein cabin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C8JC68
    Related
    ENSOTSP00005088949.2, ENSOTST00005096563.2
    Conserved Domains (4) summary
    COG0457
    Location:34 → 210
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    cd13839
    Location:2199 → 2233
    MEF2_binding; Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1
    sd00006
    Location:90 → 118
    TPR; TPR repeat [structural motif]
    cl25496
    Location:1428 → 1584
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  4. XM_024417476.2 → XP_024273244.1  calcineurin-binding protein cabin-1 isoform X4

    UniProtKB/TrEMBL
    A0A8C8JC68
    Related
    ENSOTSP00005089018.2, ENSOTST00005096639.2
    Conserved Domains (4) summary
    COG0457
    Location:34 → 210
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    cd13839
    Location:2177 → 2211
    MEF2_binding; Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1
    sd00006
    Location:90 → 118
    TPR; TPR repeat [structural motif]
    cl25496
    Location:1406 → 1562
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  5. XM_042320531.1 → XP_042176465.1  calcineurin-binding protein cabin-1 isoform X5

    UniProtKB/TrEMBL
    A0A8C8JC68
    Conserved Domains (4) summary
    COG0457
    Location:34 → 210
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:90 → 118
    TPR; TPR repeat [structural motif]
    cl29994
    Location:1407 → 1515
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
    pfam09047
    Location:2159 → 2193
    MEF2_binding; MEF2 binding

  6. XM_024417477.2 → XP_024273245.1  calcineurin-binding protein cabin-1 isoform X6

    UniProtKB/TrEMBL
    A0A8C8JC68
    Conserved Domains (4) summary
    COG0457
    Location:34 → 210
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    cd13839
    Location:2137 → 2171
    MEF2_binding; Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1
    sd00006
    Location:90 → 118
    TPR; TPR repeat [structural motif]
    cl25496
    Location:1366 → 1522
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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