U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC112244754 transcriptional repressor p66-alpha [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112244754, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC112244754
Gene description
transcriptional repressor p66-alpha
See related
EnsemblRapid:ENSOTSG00005033120
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
gatad2a
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC112244754 in Genome Data Viewer
Location:
chromosome: LG06
Exon count:
11
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG06 NC_056434.1 (20661083..20700449)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Unplaced Scaffold NW_020142498.1 (1850687..1890027)

Linkage Group LG06 - NC_056434.1Genomic Context describing neighboring genes Neighboring gene mitochondrial coenzyme A transporter SLC25A42-like Neighboring gene MAU2 chromatid cohesion factor homolog Neighboring gene testis-specific serine/threonine-protein kinase 6-like Neighboring gene yjeF N-terminal domain-containing 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcriptional repressor p66-alpha
Names
GATA zinc finger domain containing 2A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056434.1 Reference Otsh_v2.0 Primary Assembly

    Range
    20661083..20700449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024412522.2 → XP_024268290.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8C8HSJ2
    Conserved Domains (2) summary
    pfam00320
    Location:432 → 466
    GATA; GATA zinc finger
    pfam16563
    Location:149 → 185
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  2. XM_024412527.2 → XP_024268295.1  transcriptional repressor p66-alpha isoform X6

    UniProtKB/TrEMBL
    A0A8C8HSJ2
    Conserved Domains (2) summary
    pfam00320
    Location:432 → 466
    GATA; GATA zinc finger
    pfam16563
    Location:149 → 185
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  3. XM_024412524.2 → XP_024268292.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C8HSJ2
    Conserved Domains (2) summary
    pfam00320
    Location:424 → 458
    GATA; GATA zinc finger
    pfam16563
    Location:149 → 185
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  4. XM_024412523.2 → XP_024268291.1  transcriptional repressor p66-alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C8HSJ2
    Conserved Domains (2) summary
    pfam00320
    Location:427 → 461
    GATA; GATA zinc finger
    pfam16563
    Location:149 → 185
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  5. XM_024412525.2 → XP_024268293.1  transcriptional repressor p66-alpha isoform X4

    UniProtKB/TrEMBL
    A0A8C8HSJ2
    Related
    ENSOTSP00005069666.2, ENSOTST00005075648.2
    Conserved Domains (2) summary
    pfam00320
    Location:420 → 454
    GATA; GATA zinc finger
    pfam16563
    Location:149 → 185
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  6. XM_024412526.2 → XP_024268294.1  transcriptional repressor p66-alpha isoform X5

    UniProtKB/TrEMBL
    A0A8C8HSJ2
    Conserved Domains (2) summary
    pfam00320
    Location:419 → 453
    GATA; GATA zinc finger
    pfam16563
    Location:149 → 185
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  7. XM_024412528.2 → XP_024268296.1  transcriptional repressor p66-alpha isoform X7

    UniProtKB/TrEMBL
    A0A8C8HUC4
    Conserved Domains (2) summary
    pfam00320
    Location:345 → 379
    GATA; GATA zinc finger
    pfam16563
    Location:62 → 98
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  8. XM_042323065.1 → XP_042178999.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A8C8HSJ2
    Conserved Domains (2) summary
    pfam00320
    Location:432 → 466
    GATA; GATA zinc finger
    pfam16563
    Location:149 → 185
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  9. XM_024412529.2 → XP_024268297.1  transcriptional repressor p66-alpha isoform X7

    UniProtKB/TrEMBL
    A0A8C8HUC4
    Conserved Domains (2) summary
    pfam00320
    Location:345 → 379
    GATA; GATA zinc finger
    pfam16563
    Location:62 → 98
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.