U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

spen spen family transcriptional repressor [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112222020, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
spen
Gene description
spen family transcriptional repressor
See related
EnsemblRapid:ENSOTSG00005014794
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG22
Exon count:
15
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG22 NC_056450.1 (20634220..20684152, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 22 NC_037118.1 (20922976..20972992, complement)

Linkage Group LG22 - NC_056450.1Genomic Context describing neighboring genes Neighboring gene chloride channel K Neighboring gene family with sequence similarity 131 member C Neighboring gene eph receptor A2 b Neighboring gene transmembrane protein 82 Neighboring gene ATPase cation transporting 13A2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
msx2-interacting protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056450.1 Reference Otsh_v2.0 Primary Assembly

    Range
    20634220..20684152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024384550.2 → XP_024240318.1  msx2-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A8C8LNY7
    Conserved Domains (5) summary
    cd12348
    Location:7 → 81
    RRM1_SHARP; RNA recognition motif 1 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12349
    Location:374 → 446
    RRM2_SHARP; RNA recognition motif 2 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12350
    Location:479 → 552
    RRM3_SHARP; RNA recognition motif 3 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12351
    Location:553 → 629
    RRM4_SHARP; RNA recognition motif 4 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    pfam07744
    Location:3378 → 3543
    SPOC; SPOC domain

  2. XM_024384551.2 → XP_024240319.1  msx2-interacting protein isoform X3

    UniProtKB/TrEMBL
    A0A8C8LNY7
    Related
    ENSOTSP00005031462.1, ENSOTST00005034068.2
    Conserved Domains (5) summary
    cd12348
    Location:7 → 81
    RRM1_SHARP; RNA recognition motif 1 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12349
    Location:375 → 447
    RRM2_SHARP; RNA recognition motif 2 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12350
    Location:475 → 548
    RRM3_SHARP; RNA recognition motif 3 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12351
    Location:549 → 625
    RRM4_SHARP; RNA recognition motif 4 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    pfam07744
    Location:3374 → 3539
    SPOC; SPOC domain

  3. XM_024384549.2 → XP_024240317.1  msx2-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A8C8LNY7
    Related
    ENSOTSP00005031461.2, ENSOTST00005034067.2
    Conserved Domains (5) summary
    cd12348
    Location:7 → 81
    RRM1_SHARP; RNA recognition motif 1 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12349
    Location:375 → 447
    RRM2_SHARP; RNA recognition motif 2 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12350
    Location:480 → 553
    RRM3_SHARP; RNA recognition motif 3 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    cd12351
    Location:554 → 630
    RRM4_SHARP; RNA recognition motif 4 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins
    pfam07744
    Location:3379 → 3544
    SPOC; SPOC domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.