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casd1 CAS1 domain containing 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112162995, updated on 15-Mar-2024

Summary

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Gene symbol
casd1
Gene description
CAS1 domain containing 1
See related
Ensembl:ENSOMEG00000017161
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG11
Exon count:
21
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG11 NC_050522.1 (8892089..8915670, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096076.1 (3999718..4022861, complement)

Linkage Group LG11 - NC_050522.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box containing 4 Neighboring gene protein phosphatase 1, regulatory subunit 9A Neighboring gene sarcoglycan, epsilon Neighboring gene collagen, type I, alpha 2 Neighboring gene uncharacterized LOC112136284 Neighboring gene Bet1 golgi vesicular membrane trafficking protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylneuraminate 9-O-acetyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050522.1 Reference ASM292280v2 Primary Assembly

    Range
    8892089..8915670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024299085.2 → XP_024154853.1  N-acetylneuraminate 9-O-acetyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A3B3CD55
    Related
    ENSOMEP00000015539.1
    Conserved Domains (1) summary
    pfam07779
    Location:343 → 753
    Cas1_AcylT; 10 TM Acyl Transferase domain found in Cas1p

  2. XM_024299062.2 → XP_024154830.1  N-acetylneuraminate 9-O-acetyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A834F1N4
    Conserved Domains (1) summary
    pfam07779
    Location:343 → 818
    Cas1_AcylT; 10 TM Acyl Transferase domain found in Cas1p

  3. XM_024299077.2 → XP_024154845.1  N-acetylneuraminate 9-O-acetyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A3B3DPU6, A0A834F1N4
    Related
    ENSOMEP00000031951.1
    Conserved Domains (1) summary
    pfam07779
    Location:333 → 808
    Cas1_AcylT; 10 TM Acyl Transferase domain found in Cas1p

RNA

  1. XR_002922210.2 RNA Sequence

  2. XR_002922208.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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