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fam83b family with sequence similarity 83 member B [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112162166, updated on 15-Mar-2024

Summary

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Gene symbol
fam83b
Gene description
family with sequence similarity 83 member B
See related
Ensembl:ENSOMEG00000001954
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See fam83b in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
6
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG15 NC_050526.1 (23591448..23614982)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096100.1 (22705011..22728448)

Linkage Group LG15 - NC_050526.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 1 Neighboring gene muscular LMNA-interacting protein Neighboring gene hypocretin (orexin) receptor 2 Neighboring gene 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAM83B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050526.1 Reference ASM292280v2 Primary Assembly

    Range
    23591448..23614982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024297868.2 → XP_024153636.1  protein FAM83B isoform X2

    UniProtKB/TrEMBL
    A0A3B3B664
    Conserved Domains (1) summary
    cl15239
    Location:40 → 307
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins

  2. XM_024297867.2 → XP_024153635.1  protein FAM83B isoform X1

    UniProtKB/TrEMBL
    A0A3B3B664, A0A834FEB8
    Related
    ENSOMEP00000001076.1
    Conserved Domains (1) summary
    cl15239
    Location:47 → 314
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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