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prr18 proline rich 18 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112161833, updated on 15-Mar-2024

Summary

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Gene symbol
prr18
Gene description
proline rich 18
See related
Ensembl:ENSOMEG00000001276
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
1
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG15 NC_050526.1 (25696234..25696995)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096100.1 (24809700..24810461)

Linkage Group LG15 - NC_050526.1Genomic Context describing neighboring genes Neighboring gene c-mer proto-oncogene tyrosine kinase a Neighboring gene SFT2 domain containing 1 Neighboring gene uncharacterized LOC112161721 Neighboring gene T-box transcription factor Tb Neighboring gene phosphodiesterase 10A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
proline-rich protein 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050526.1 Reference ASM292280v2 Primary Assembly

    Range
    25696234..25696995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024297303.1 → XP_024153071.1  proline-rich protein 18

    UniProtKB/TrEMBL
    A0A3B3CWJ1, A0A834F769
    Related
    ENSOMEP00000021976.1, ENSOMET00000015944.1
    Conserved Domains (1) summary
    pfam15671
    Location:44 → 250
    PRR18; Proline-rich protein family 18
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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