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ccne1 cyclin E1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112160906, updated on 15-Mar-2024

Summary

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Gene symbol
ccne1
Gene description
cyclin E1
See related
Ensembl:ENSOMEG00000021519
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
12
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG3 NC_050514.1 (34310792..34320711, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096099.1 (1263554..1273475)

Linkage Group LG3 - NC_050514.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112160328 Neighboring gene uncharacterized LOC112160985 Neighboring gene uncharacterized LOC112160908 Neighboring gene uncharacterized LOC112160907

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G1/S transition of mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of cyclin E1-CDK2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
G1/S-specific cyclin-E1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050514.1 Reference ASM292280v2 Primary Assembly

    Range
    34310792..34320711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024295798.2 → XP_024151566.1  G1/S-specific cyclin-E1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3CPB2, A0A834FI68
    Conserved Domains (2) summary
    pfam00134
    Location:116 → 242
    Cyclin_N; Cyclin, N-terminal domain
    pfam02984
    Location:245 → 340
    Cyclin_C; Cyclin, C-terminal domain

  2. XM_024295797.2 → XP_024151565.1  G1/S-specific cyclin-E1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3CPB2, A0A834FI68
    Related
    ENSOMEP00000019713.1
    Conserved Domains (2) summary
    pfam00134
    Location:116 → 242
    Cyclin_N; Cyclin, N-terminal domain
    pfam02984
    Location:245 → 340
    Cyclin_C; Cyclin, C-terminal domain

  3. XM_036211381.1 → XP_036067274.1  G1/S-specific cyclin-E1 isoform X2

    UniProtKB/TrEMBL
    A0A834FI68
    Conserved Domains (1) summary
    cl40454
    Location:103 → 238
    CYCLIN_SF; Cyclin box fold superfamily
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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