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uacab uveal autoantigen with coiled-coil domains and ankyrin repeats b [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112160467, updated on 15-Mar-2024

Summary

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Gene symbol
uacab
Gene description
uveal autoantigen with coiled-coil domains and ankyrin repeats b
See related
Ensembl:ENSOMEG00000008617
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
uaca
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
22
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG3 NC_050514.1 (9860895..9902783, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096099.1 (25681531..25723367)

Linkage Group LG3 - NC_050514.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112140301 Neighboring gene TLE family member 3, transcriptional corepressor b Neighboring gene mortality factor 4-like protein 1 Neighboring gene relaxin-3 receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uveal autoantigen with coiled-coil domains and ankyrin repeats; uveal autoantigen with coiled-coil domains and ankyrin repeats protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050514.1 Reference ASM292280v2 Primary Assembly

    Range
    9860895..9902783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036217379.1 → XP_036073272.1  uveal autoantigen with coiled-coil domains and ankyrin repeats isoform X1

    UniProtKB/TrEMBL
    A0A3B3DBA5
    Conserved Domains (4) summary
    COG1196
    Location:993 → 1310
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:413 → 1102
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    sd00045
    Location:123 → 153
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:61 → 153
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_024294988.2 → XP_024150756.1  uveal autoantigen with coiled-coil domains and ankyrin repeats protein isoform X2

    UniProtKB/TrEMBL
    A0A3B3BR81
    Related
    ENSOMEP00000007493.1
    Conserved Domains (3) summary
    cd00204
    Location:81 → 205
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:119 → 149
    ANK; ANK repeat [structural motif]
    cl25732
    Location:416 → 1302
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_024294989.1 → XP_024150757.1  uveal autoantigen with coiled-coil domains and ankyrin repeats protein isoform X3

    Conserved Domains (3) summary
    cd00204
    Location:3 → 75
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:23 → 54
    ANK; ANK repeat [structural motif]
    cl25732
    Location:264 → 1141
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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