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elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112159775, updated on 15-Mar-2024

Summary

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Gene symbol
elapor1
Gene description
endosome-lysosome associated apoptosis and autophagy regulator 1
See related
Ensembl:ENSOMEG00000020232
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
kiaa1324
Orthologs
human zebrafish all
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Genomic context

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See elapor1 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
22
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG7 NC_050518.1 (7348901..7363906, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096096.1 (12816321..12831225, complement)

Linkage Group LG7 - NC_050518.1Genomic Context describing neighboring genes Neighboring gene LHFPL tetraspan subfamily member 5b Neighboring gene SRSF protein kinase 1a Neighboring gene mitogen-activated protein kinase 14a Neighboring gene structural maintenance of chromosomes 5 Neighboring gene small Cajal body-specific RNA 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular exosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endosome/lysosome-associated apoptosis and autophagy regulator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050518.1 Reference ASM292280v2 Primary Assembly

    Range
    7348901..7363906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024294037.2 → XP_024149805.1  endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3DX94, A0A834CDQ2
    Related
    ENSOMEP00000033945.1
    Conserved Domains (1) summary
    cl22855
    Location:337 → 400
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  2. XM_036212696.1 → XP_036068589.1  endosome/lysosome-associated apoptosis and autophagy regulator 1 isoform X2

    UniProtKB/TrEMBL
    A0A834CDQ2
    Conserved Domains (1) summary
    cl22855
    Location:337 → 400
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

RNA

  1. XR_002921536.2 RNA Sequence

  2. XR_004948173.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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