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glt8d2 glycosyltransferase 8 domain containing 2 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112158379, updated on 15-Mar-2024

Summary

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Gene symbol
glt8d2
Gene description
glycosyltransferase 8 domain containing 2
See related
Ensembl:ENSOMEG00000016873
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG23
Exon count:
10
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG23 NC_050534.1 (5143631..5150704, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096075.1 (1854424..1861495, complement)

Linkage Group LG23 - NC_050534.1Genomic Context describing neighboring genes Neighboring gene SET binding factor 1 Neighboring gene uncharacterized LOC118598072 Neighboring gene adrenomedullin 2a Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene ankyrin repeat domain 16 Neighboring gene GDP dissociation inhibitor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycosyltransferase 8 domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050534.1 Reference ASM292280v2 Primary Assembly

    Range
    5143631..5150704 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024291711.2 → XP_024147479.1  glycosyltransferase 8 domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A834CCQ6
    Conserved Domains (1) summary
    cl11394
    Location:2 → 271
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_024291704.2 → XP_024147472.1  glycosyltransferase 8 domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A3B3CBW0
    Related
    ENSOMEP00000015300.1
    Conserved Domains (1) summary
    cl11394
    Location:57 → 342
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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