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clec11a C-type lectin domain containing 11A [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112157975, updated on 15-Mar-2024

Summary

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Gene symbol
clec11a
Gene description
C-type lectin domain containing 11A
See related
Ensembl:ENSOMEG00000023194
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See clec11a in Genome Data Viewer
Location:
chromosome: LG24
Exon count:
6
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG24 NC_050535.1 (19525210..19532100, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096095.1 (6210535..6217419)

Linkage Group LG24 - NC_050535.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 13 Neighboring gene selenoprotein L Neighboring gene linkage group 24 C1orf198 homolog Neighboring gene gap junction Cx32.2 protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
C-type lectin domain family 11 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050535.1 Reference ASM292280v2 Primary Assembly

    Range
    19525210..19532100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024291111.2 → XP_024146879.1  C-type lectin domain family 11 member A

    UniProtKB/TrEMBL
    A0A3B3CUP7
    Related
    ENSOMEP00000021326.1
    Conserved Domains (1) summary
    cl02432
    Location:135 → 264
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_024291112.2 → XP_024146880.1  C-type lectin domain family 11 member A

    UniProtKB/TrEMBL
    A0A3B3CUP7
    Conserved Domains (1) summary
    cl02432
    Location:135 → 264
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_036210679.1 → XP_036066572.1  C-type lectin domain family 11 member A

    UniProtKB/TrEMBL
    A0A3B3CUP7
    Conserved Domains (1) summary
    cl02432
    Location:135 → 264
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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