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cfap61 cilia and flagella associated protein 61 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112157741, updated on 15-Mar-2024

Summary

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Gene symbol
cfap61
Gene description
cilia and flagella associated protein 61
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG24
Exon count:
24
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG24 NC_050535.1 (17361379..17395490, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096095.1 (8347154..8381250)

Linkage Group LG24 - NC_050535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118598137 Neighboring gene insulinoma-associated 1a Neighboring gene crooked neck pre-mRNA splicing factor 1 Neighboring gene N-alpha-acetyltransferase 20, NatB catalytic subunit Neighboring gene CD109 molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cilia- and flagella-associated protein 61

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050535.1 Reference ASM292280v2 Primary Assembly

    Range
    17361379..17395490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024290699.2 → XP_024146467.1  cilia- and flagella-associated protein 61 isoform X1

    Conserved Domains (2) summary
    pfam16092
    Location:11 → 206
    DUF4821; Domain of unknown function (DUF4821)
    cl26176
    Location:522 → 623
    NirB; NAD(P)H-nitrite reductase, large subunit [Energy production and conversion]

  2. XM_024290701.2 → XP_024146469.1  cilia- and flagella-associated protein 61 isoform X3

    Conserved Domains (2) summary
    pfam16092
    Location:11 → 206
    DUF4821; Domain of unknown function (DUF4821)
    cl26176
    Location:522 → 623
    NirB; NAD(P)H-nitrite reductase, large subunit [Energy production and conversion]

  3. XM_024290700.2 → XP_024146468.1  cilia- and flagella-associated protein 61 isoform X2

    Conserved Domains (2) summary
    pfam16092
    Location:11 → 206
    DUF4821; Domain of unknown function (DUF4821)
    cl26176
    Location:521 → 622
    NirB; NAD(P)H-nitrite reductase, large subunit [Energy production and conversion]

  4. XM_024290698.2 → XP_024146466.1  cilia- and flagella-associated protein 61 isoform X1

    Conserved Domains (2) summary
    pfam16092
    Location:11 → 206
    DUF4821; Domain of unknown function (DUF4821)
    cl26176
    Location:522 → 623
    NirB; NAD(P)H-nitrite reductase, large subunit [Energy production and conversion]
Nucleotide Protein Strain
Heading Accession and Version

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