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lonrf1 LON peptidase N-terminal domain and ring finger 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112157263, updated on 15-Mar-2024

Summary

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Gene symbol
lonrf1
Gene description
LON peptidase N-terminal domain and ring finger 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
lonrf1l
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG1
Exon count:
12
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG1 NC_050512.1 (19423295..19433215)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096094.1 (13217161..13227057, complement)

Linkage Group LG1 - NC_050512.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118598953 Neighboring gene coiled-coil domain containing 149b Neighboring gene leucine-rich repeat LGI family, member 2b Neighboring gene calcium binding protein 4 Neighboring gene double C2-like domains, gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LON peptidase N-terminal domain and ring finger 1, like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050512.1 Reference ASM292280v2 Primary Assembly

    Range
    19423295..19433215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024289922.2 → XP_024145690.1  LON peptidase N-terminal domain and ring finger 1, like

    UniProtKB/TrEMBL
    A0A834CJ82
    Conserved Domains (6) summary
    sd00006
    Location:200 → 229
    TPR; TPR repeat [structural motif]
    pfam02190
    Location:529 → 727
    LON_substr_bdg; ATP-dependent protease La (LON) substrate-binding domain
    pfam14559
    Location:179 → 225
    TPR_19; Tetratricopeptide repeat
    cd16514
    Location:438 → 479
    RING2-HC_LONFs; RING finger 2, HC subclass, found in the LON peptidase N-terminal domain and RING finger proteins family
    cl17238
    Location:104 → 139
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl26688
    Location:102 → 182
    DWNN; DWNN domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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