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evi5l ecotropic viral integration site 5 like [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112157179, updated on 15-Mar-2024

Summary

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Gene symbol
evi5l
Gene description
ecotropic viral integration site 5 like
See related
Ensembl:ENSOMEG00000010401
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
si:ch211-239f4.1
Orthologs
zebrafish all
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Genomic context

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See evi5l in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
19
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG1 NC_050512.1 (30983242..31013994, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096094.1 (1636384..1667134)

Linkage Group LG1 - NC_050512.1Genomic Context describing neighboring genes Neighboring gene B-cell receptor CD22 Neighboring gene lysozyme g Neighboring gene zinc finger protein Gfi-1 Neighboring gene ATP-dependent RNA helicase DDX39A Neighboring gene CCN family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
EVI5-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050512.1 Reference ASM292280v2 Primary Assembly

    Range
    30983242..31013994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036214129.1 → XP_036070022.1  EVI5-like protein isoform X1

    UniProtKB/TrEMBL
    A0A834CDB3
    Conserved Domains (2) summary
    smart00164
    Location:169 → 377
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    TIGR02168
    Location:433 → 777
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_024289778.2 → XP_024145546.1  EVI5-like protein isoform X3

    UniProtKB/TrEMBL
    A0A3B3DE19, A0A834CDB3
    Related
    ENSOMEP00000027734.1
    Conserved Domains (2) summary
    smart00164
    Location:145 → 353
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cl25732
    Location:391 → 742
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_024289777.2 → XP_024145545.1  EVI5-like protein isoform X2

    UniProtKB/TrEMBL
    A0A3B3DCY8, A0A834CDB3
    Related
    ENSOMEP00000027751.1
    Conserved Domains (2) summary
    smart00164
    Location:145 → 353
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cl25732
    Location:409 → 753
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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