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trip6 thyroid hormone receptor interactor 6 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112156139, updated on 15-Mar-2024

Summary

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Gene symbol
trip6
Gene description
thyroid hormone receptor interactor 6
See related
Ensembl:ENSOMEG00000011490
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG18
Exon count:
11
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG18 NC_050529.1 (14251351..14261764, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096092.1 (11251610..11262005)

Linkage Group LG18 - NC_050529.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112155656 Neighboring gene somatostatin 5 Neighboring gene BCL6B transcription repressor Neighboring gene solute carrier family 16 member 13 Neighboring gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thyroid receptor-interacting protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050529.1 Reference ASM292280v2 Primary Assembly

    Range
    14251351..14261764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024288317.2 → XP_024144085.1  thyroid receptor-interacting protein 6 isoform X3

    Conserved Domains (4) summary
    cd09350
    Location:371 → 424
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09357
    Location:491 → 553
    LIM3_Zyxin_like; The third LIM domain of Zyxin-like family
    cl02475
    Location:431 → 490
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl25764
    Location:159 → 314
    PAT1; Topoisomerase II-associated protein PAT1

  2. XM_024288318.2 → XP_024144086.1  thyroid receptor-interacting protein 6 isoform X2

    Conserved Domains (4) summary
    cd09350
    Location:371 → 424
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09357
    Location:491 → 553
    LIM3_Zyxin_like; The third LIM domain of Zyxin-like family
    cl02475
    Location:431 → 490
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl25764
    Location:160 → 315
    PAT1; Topoisomerase II-associated protein PAT1

  3. XM_024288315.2 → XP_024144083.1  thyroid receptor-interacting protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A3B3BZF5
    Conserved Domains (4) summary
    cd09350
    Location:372 → 425
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09357
    Location:492 → 554
    LIM3_Zyxin_like; The third LIM domain of Zyxin-like family
    cl02475
    Location:432 → 491
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl25764
    Location:160 → 315
    PAT1; Topoisomerase II-associated protein PAT1

  4. XM_024288316.2 → XP_024144084.1  thyroid receptor-interacting protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A3B3BZF5
    Related
    ENSOMEP00000010192.1
    Conserved Domains (4) summary
    cd09350
    Location:372 → 425
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09357
    Location:492 → 554
    LIM3_Zyxin_like; The third LIM domain of Zyxin-like family
    cl02475
    Location:432 → 491
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    cl25764
    Location:160 → 315
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein Strain
Heading Accession and Version

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