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dap1b death associated protein 1b [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112154763, updated on 15-Mar-2024

Summary

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Gene symbol
dap1b
Gene description
death associated protein 1b
See related
Ensembl:ENSOMEG00000002297
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
dapl1
Orthologs
zebrafish all
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Genomic context

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See dap1b in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
4
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG21 NC_050532.1 (17707589..17709167)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096091.1 (11209343..11210906, complement)

Linkage Group LG21 - NC_050532.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 148 Neighboring gene uridine phosphorylase 2 Neighboring gene plakophilin-4 Neighboring gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1b Neighboring gene WD repeat, SAM and U-box domain-containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables death domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
death associated protein 1b
Names
death associated protein like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050532.1 Reference ASM292280v2 Primary Assembly

    Range
    17707589..17709167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024285906.2 → XP_024141674.1  death associated protein 1b

    UniProtKB/TrEMBL
    A0A3B3B8E3
    Related
    ENSOMEP00000001409.1
    Conserved Domains (1) summary
    pfam15228
    Location:18 → 115
    DAP; Death-associated protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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