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nploc4 NPL4 homolog, ubiquitin recognition factor [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112153965, updated on 15-Mar-2024

Summary

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Gene symbol
nploc4
Gene description
NPL4 homolog, ubiquitin recognition factor
See related
Ensembl:ENSOMEG00000021311
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
17
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG19 NC_050530.1 (23052632..23067078, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096090.1 (19075758..19090205, complement)

Linkage Group LG19 - NC_050530.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 131 Neighboring gene ring finger protein 213b Neighboring gene uncharacterized LOC112153966 Neighboring gene uncharacterized LOC118600153 Neighboring gene phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b Neighboring gene G protein-coupled receptor, class C, group 5, member C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear protein localization protein 4 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050530.1 Reference ASM292280v2 Primary Assembly

    Range
    23052632..23067078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024284464.2 → XP_024140232.1  nuclear protein localization protein 4 homolog

    UniProtKB/TrEMBL
    A0A3B3CPC3, A0A3B3CQW5
    Related
    ENSOMEP00000019479.1
    Conserved Domains (4) summary
    sd00029
    Location:598 → 617
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam05020
    Location:119 → 259
    zf-NPL4; NPL4 family, putative zinc binding region
    pfam05021
    Location:262 → 569
    NPL4; NPL4 family
    pfam11543
    Location:6 → 78
    UN_NPL4; Nuclear pore localization protein NPL4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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