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sfxn5b sideroflexin 5b [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112153292, updated on 15-Mar-2024

Summary

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Gene symbol
sfxn5b
Gene description
sideroflexin 5b
See related
Ensembl:ENSOMEG00000013084
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
sfxn5
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG10
Exon count:
14
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG10 NC_050521.1 (7237903..7260544, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096089.1 (18487866..18510488, complement)

Linkage Group LG10 - NC_050521.1Genomic Context describing neighboring genes Neighboring gene GDNF family receptor alpha 4b Neighboring gene SMYD family member 5 Neighboring gene RAB11 family interacting protein 5b (class I) Neighboring gene BEN domain-containing protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables citrate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monoatomic ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in citrate transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sideroflexin-5b
Names
sideroflexin 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050521.1 Reference ASM292280v2 Primary Assembly

    Range
    7237903..7260544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024283377.2 → XP_024139145.1  sideroflexin-5b isoform X1

    Conserved Domains (1) summary
    pfam03820
    Location:17 → 355
    Mtc; Tricarboxylate carrier

  2. XM_024283381.2 → XP_024139149.1  sideroflexin-5b isoform X4

    UniProtKB/TrEMBL
    A0A3B3C1D7
    Conserved Domains (1) summary
    pfam03820
    Location:17 → 280
    Mtc; Tricarboxylate carrier

  3. XM_024283380.2 → XP_024139148.1  sideroflexin-5b isoform X3

    UniProtKB/TrEMBL
    A0A3B3C1S0, A0A834F9U3
    Related
    ENSOMEP00000011770.1
    Conserved Domains (1) summary
    pfam03820
    Location:17 → 325
    Mtc; Tricarboxylate carrier

  4. XM_036213826.1 → XP_036069719.1  sideroflexin-5b isoform X5

    UniProtKB/TrEMBL
    A0A3B3C1D7
    Conserved Domains (1) summary
    pfam03820
    Location:12 → 271
    Mtc; Tricarboxylate carrier

  5. XM_024283379.2 → XP_024139147.1  sideroflexin-5b isoform X2

    Conserved Domains (1) summary
    pfam03820
    Location:7 → 343
    Mtc; Tricarboxylate carrier
Nucleotide Protein Strain
Heading Accession and Version

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