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pdgfrl platelet-derived growth factor receptor-like [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112153039, updated on 15-Mar-2024

Summary

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Gene symbol
pdgfrl
Gene description
platelet-derived growth factor receptor-like
See related
Ensembl:ENSOMEG00000000378
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG10
Exon count:
6
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG10 NC_050521.1 (21971961..21975939, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096089.1 (3881023..3885405)

Linkage Group LG10 - NC_050521.1Genomic Context describing neighboring genes Neighboring gene synaptobrevin-like 1 Neighboring gene microtubule associated tumor suppressor 1a Neighboring gene solute carrier family 7 member 2 Neighboring gene myotubularin related protein 7a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
platelet-derived growth factor receptor-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050521.1 Reference ASM292280v2 Primary Assembly

    Range
    21971961..21975939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024282917.2 → XP_024138685.1  platelet-derived growth factor receptor-like protein

    UniProtKB/TrEMBL
    A0A3B3DMC5, A0A834F1V4
    Related
    ENSOMEP00000030629.1
    Conserved Domains (2) summary
    smart00409
    Location:74 → 137
    IG; Immunoglobulin
    cl28434
    Location:275 → 364
    I-set; Immunoglobulin I-set domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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