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ticrr TopBP1-interacting, checkpoint, and replication regulator [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112151951, updated on 15-Mar-2024

Summary

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Gene symbol
ticrr
Gene description
TopBP1-interacting, checkpoint, and replication regulator
See related
Ensembl:ENSOMEG00000003878
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG6
Exon count:
21
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG6 NC_050517.1 (4586893..4609624)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096088.1 (27420197..27442908, complement)

Linkage Group LG6 - NC_050517.1Genomic Context describing neighboring genes Neighboring gene alkB homolog 3, alpha-ketoglutarate dependent dioxygenase Neighboring gene linkage group 6 C11orf96 homolog Neighboring gene creatine kinase, mitochondrial 1 Neighboring gene protein disulfide isomerase family A, member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic DNA replication checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic G2 DNA damage checkpoint signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated DNA replication initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to ionizing radiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
treslin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050517.1 Reference ASM292280v2 Primary Assembly

    Range
    4586893..4609624
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024281100.2 → XP_024136868.1  treslin isoform X1

    UniProtKB/TrEMBL
    A0A3B3BCK7
    Related
    ENSOMEP00000002942.1
    Conserved Domains (1) summary
    pfam15292
    Location:213 → 970
    Treslin_N; Treslin N-terminus

  2. XM_024281101.2 → XP_024136869.1  treslin isoform X2

    Conserved Domains (1) summary
    pfam15292
    Location:213 → 970
    Treslin_N; Treslin N-terminus
Nucleotide Protein Strain
Heading Accession and Version

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