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kcnh2b potassium voltage-gated channel, subfamily H (eag-related), member 2b [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112151588, updated on 15-Mar-2024

Summary

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Gene symbol
kcnh2b
Gene description
potassium voltage-gated channel, subfamily H (eag-related), member 2b
See related
Ensembl:ENSOMEG00000001168
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
kcnh2
Orthologs
zebrafish all
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Genomic context

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See kcnh2b in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
22
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG20 NC_050531.1 (21068279..21326400, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096087.1 (2149607..2408626)

Linkage Group LG20 - NC_050531.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat-containing protein 19 Neighboring gene microtubule-associated protein 4 Neighboring gene intraflagellar transport 74 Neighboring gene uncharacterized LOC118600226 Neighboring gene SCO-spondin Neighboring gene amine oxidase copper containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inward rectifier potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane repolarization during action potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of heart rate by cardiac conduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of ventricular cardiac muscle cell membrane repolarization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium voltage-gated channel subfamily H member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050531.1 Reference ASM292280v2 Primary Assembly

    Range
    21068279..21326400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036217494.1 → XP_036073387.1  potassium voltage-gated channel subfamily H member 2

    UniProtKB/TrEMBL
    A0A3B3CWE6
    Conserved Domains (3) summary
    cd00038
    Location:765 → 876
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:437 → 691
    Ion_trans; Ion transport protein
    pfam13426
    Location:29 → 134
    PAS_9; PAS domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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