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henmt1 HEN methyltransferase 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112150411, updated on 15-Mar-2024

Summary

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Gene symbol
henmt1
Gene description
HEN methyltransferase 1
See related
Ensembl:ENSOMEG00000010988
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG4
Exon count:
9
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG4 NC_050515.1 (17758461..17762198, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096086.1 (5367378..5371115)

Linkage Group LG4 - NC_050515.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118598676 Neighboring gene transmembrane protein 69 Neighboring gene calcium-binding mitochondrial carrier protein SCaMC-1 Neighboring gene family with sequence similarity 102 member Bb Neighboring gene uncharacterized LOC112150698 Neighboring gene fibronectin type III domain-containing protein 7-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in siRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small RNA 2'-O-methyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050515.1 Reference ASM292280v2 Primary Assembly

    Range
    17758461..17762198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024278732.1 → XP_024134500.1  small RNA 2'-O-methyltransferase

    UniProtKB/TrEMBL
    A0A3B3DFE9
    Related
    ENSOMEP00000028125.1, ENSOMET00000000250.1
    Conserved Domains (1) summary
    COG2227
    Location:27 → 154
    UbiG; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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