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LOC112147620 lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112147620, updated on 14-Dec-2023

Summary

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Gene symbol
LOC112147620
Gene description
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A
See related
Ensembl:ENSOMEG00000006180
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
b3gnt5
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Genomic context

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Location:
chromosome: LG17
Exon count:
8
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG17 NC_050528.1 (26172880..26193139)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096083.1 (19388627..19408761)

Linkage Group LG17 - NC_050528.1Genomic Context describing neighboring genes Neighboring gene calcium-activated potassium channel subunit beta-2 Neighboring gene F-box-like/WD repeat-containing protein TBL1XR1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase 2-like Neighboring gene small nucleolar RNA SNORA81 Neighboring gene eukaryotic translation initiation factor 4A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A
Names
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050528.1 Reference ASM292280v2 Primary Assembly

    Range
    26172880..26193139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036216165.1 → XP_036072058.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A isoform X1

    UniProtKB/TrEMBL
    A0A3B3BIY8
    Conserved Domains (1) summary
    cl21608
    Location:102 → 307
    Galactosyl_T; Galactosyltransferase

  2. XM_024274142.2 → XP_024129910.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A isoform X3

    UniProtKB/TrEMBL
    A0A3B3BIY8, A0A3B3BJI3
    Related
    ENSOMEP00000005190.1
    Conserved Domains (1) summary
    cl21608
    Location:102 → 307
    Galactosyl_T; Galactosyltransferase

  3. XM_024274138.2 → XP_024129906.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A isoform X2

    UniProtKB/TrEMBL
    A0A3B3BIY8, A0A834BUJ8
    Conserved Domains (1) summary
    cl21608
    Location:102 → 307
    Galactosyl_T; Galactosyltransferase

  4. XM_024274141.2 → XP_024129909.2  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A isoform X1

    UniProtKB/TrEMBL
    A0A3B3BIY8
    Conserved Domains (1) summary
    cl21608
    Location:102 → 307
    Galactosyl_T; Galactosyltransferase

  5. XM_024274139.2 → XP_024129907.2  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A isoform X1

    UniProtKB/TrEMBL
    A0A3B3BIY8
    Conserved Domains (1) summary
    cl21608
    Location:102 → 307
    Galactosyl_T; Galactosyltransferase

  6. XM_024274140.2 → XP_024129908.2  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A isoform X1

    UniProtKB/TrEMBL
    A0A3B3BIY8
    Conserved Domains (1) summary
    cl21608
    Location:102 → 307
    Galactosyl_T; Galactosyltransferase

RNA

  1. XR_002919491.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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