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toe1 target of EGR1, exonuclease [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112147414, updated on 15-Mar-2024

Summary

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Gene symbol
toe1
Gene description
target of EGR1, exonuclease
See related
Ensembl:ENSOMEG00000014153
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See toe1 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
8
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG17 NC_050528.1 (21555498..21561362)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096083.1 (14771084..14776984)

Linkage Group LG17 - NC_050528.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112147415 Neighboring gene selenoprotein P2 Neighboring gene transmembrane protein 53 Neighboring gene E3 ubiquitin-protein ligase Rnf220-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Cajal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
target of EGR1 protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050528.1 Reference ASM292280v2 Primary Assembly

    Range
    21555498..21561362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024273780.2 → XP_024129548.1  target of EGR1 protein 1

    UniProtKB/TrEMBL
    A0A3B3C582
    Related
    ENSOMEP00000012744.1
    Conserved Domains (1) summary
    pfam04857
    Location:12 → 252
    CAF1; CAF1 family ribonuclease
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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