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slmapa sarcolemma associated protein a [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112144624, updated on 15-Mar-2024

Summary

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Gene symbol
slmapa
Gene description
sarcolemma associated protein a
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
slmap
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See slmapa in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
22
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG5 NC_050516.1 (5333951..5361668)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096081.1 (37640567..37668284, complement)

Linkage Group LG5 - NC_050516.1Genomic Context describing neighboring genes Neighboring gene insulin-degrading enzyme Neighboring gene condensin-2 complex subunit D3 Neighboring gene uncharacterized LOC112144625 Neighboring gene filamin B, like Neighboring gene complement C1q subcomponent subunit B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane depolarization during cardiac muscle cell action potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of voltage-gated sodium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sarcolemma associated protein a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050516.1 Reference ASM292280v2 Primary Assembly

    Range
    5333951..5361668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024269250.1 → XP_024125018.1  sarcolemma associated protein a

    Conserved Domains (2) summary
    cd00060
    Location:14 → 108
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    cl25732
    Location:172 → 860
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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