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rps15 ribosomal protein S15 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112144412, updated on 15-Mar-2024

Summary

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Gene symbol
rps15
Gene description
ribosomal protein S15
See related
Ensembl:ENSOMEG00000018049
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Annotation information
Annotation category: partial on reference assembly
Orthologs
human zebrafish all
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Genomic context

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See rps15 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
4
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG17 NC_050528.1 (16383243..16389856, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096080.1 (4036683..4043301, complement)

Linkage Group LG17 - NC_050528.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent 6-phosphofructokinase, platelet type Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene pitrilysin metallopeptidase 1 Neighboring gene calponin 2 Neighboring gene cofactor required for Sp1 transcriptional activation, subunit 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050528.1 Reference ASM292280v2 Primary Assembly

    Range
    16383243..16389856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024268926.2 → XP_024124694.1  40S ribosomal protein S15

    UniProtKB/TrEMBL
    A0A3B3CGE2, A0A834C9B2
    Related
    ENSOMEP00000016399.1
    Conserved Domains (1) summary
    PTZ00096
    Location:1 → 143
    PTZ00096; 40S ribosomal protein S15; Provisional
Nucleotide Protein Strain
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