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srp19 signal recognition particle 19 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112142056, updated on 15-Mar-2024

Summary

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Gene symbol
srp19
Gene description
signal recognition particle 19
See related
Ensembl:ENSOMEG00000009178
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG9
Exon count:
5
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG9 NC_050520.1 (303696..306043)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020104040.1 (303711..306060)

Linkage Group LG9 - NC_050520.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 2A catalytic subunit Neighboring gene radial spoke head 14 homolog Neighboring gene ubiquitin carboxyl-terminal hydrolase 32-like Neighboring gene uncharacterized LOC112136418 Neighboring gene arf-GAP with dual PH domain-containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 7S RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of signal recognition particle, endoplasmic reticulum targeting IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal recognition particle 19 kDa protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050520.1 Reference ASM292280v2 Primary Assembly

    Range
    303696..306043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024265293.2 → XP_024121061.1  signal recognition particle 19 kDa protein

    UniProtKB/TrEMBL
    A0A3B3BRB9, A0A3B3BSI6
    Related
    ENSOMEP00000008020.1
    Conserved Domains (1) summary
    pfam01922
    Location:16 → 113
    SRP19; SRP19 protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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