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rtel1 regulator of telomere elongation helicase 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112140874, updated on 15-Mar-2024

Summary

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Gene symbol
rtel1
Gene description
regulator of telomere elongation helicase 1
See related
Ensembl:ENSOMEG00000022856
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See rtel1 in Genome Data Viewer
Location:
chromosome: LG7
Exon count:
33
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG7 NC_050518.1 (32885192..32902584)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020101753.1 (670653..688046)

Linkage Group LG7 - NC_050518.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112140877 Neighboring gene TBC1 domain family, member 25 Neighboring gene NADH:ubiquinone oxidoreductase subunit B11 Neighboring gene isoprenylcysteine carboxyl methyltransferase Neighboring gene 60S ribosomal protein L22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA polymerase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of t-circle formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomeric loop disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of telomere elongation helicase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050518.1 Reference ASM292280v2 Primary Assembly

    Range
    32885192..32902584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036213004.1 → XP_036068897.1  regulator of telomere elongation helicase 1 isoform X1

    UniProtKB/TrEMBL
    A0A834CNE6
    Conserved Domains (3) summary
    cd13932
    Location:937 → 1035
    HN_RTEL1; harmonin_N_like domain of regulator of telomere elongation helicase 1 (also known as RTEL)
    TIGR00604
    Location:10 → 782
    rad3; DNA repair helicase (rad3)
    cl11968
    Location:1077 → 1168
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)

  2. XM_024263894.1 → XP_024119662.1  regulator of telomere elongation helicase 1 isoform X3

    UniProtKB/TrEMBL
    A0A3B3DZI5, A0A834CNE6
    Related
    ENSOMEP00000035528.1, ENSOMET00000030524.1
    Conserved Domains (3) summary
    cd13932
    Location:897 → 995
    HN_RTEL1; harmonin_N_like domain of regulator of telomere elongation helicase 1 (also known as RTEL)
    cl11968
    Location:1037 → 1128
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
    cl26947
    Location:10 → 742
    HBB; Helical and beta-bridge domain

  3. XM_036213005.1 → XP_036068898.1  regulator of telomere elongation helicase 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B3CSV6
    Conserved Domains (3) summary
    cd13932
    Location:784 → 882
    HN_RTEL1; harmonin_N_like domain of regulator of telomere elongation helicase 1 (also known as RTEL)
    TIGR00604
    Location:11 → 629
    rad3; DNA repair helicase (rad3)
    cl11968
    Location:924 → 1015
    harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
Nucleotide Protein Strain
Heading Accession and Version

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