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ppox protoporphyrinogen oxidase [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112139481, updated on 15-Mar-2024

Summary

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Gene symbol
ppox
Gene description
protoporphyrinogen oxidase
See related
Ensembl:ENSOMEG00000019389
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current ASM292280v2 (GCF_002922805.2) Unplaced Scaffold NW_023416889.1 (405003..415489, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020099098.1 (405003..417471, complement)

NW_023416889.1Genomic Context describing neighboring genes Neighboring gene sodium- and chloride-dependent transporter XTRP3A Neighboring gene SAC1 like phosphatidylinositide phosphatase b Neighboring gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B Neighboring gene fibrillarin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxygen-dependent protoporphyrinogen oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heme biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protoporphyrinogen oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NW_023416889.1 Reference ASM292280v2 Primary Assembly

    Range
    405003..415489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024262298.2 → XP_024118066.1  protoporphyrinogen oxidase

    UniProtKB/TrEMBL
    A0A3B3DTY9, A0A834FRC6
    Related
    ENSOMEP00000033401.1
    Conserved Domains (1) summary
    cl27533
    Location:51 → 504
    HemY; Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Nucleotide Protein Strain
Heading Accession and Version

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