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LOC112137885 tectonic-1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112137885, updated on 14-Dec-2023

Summary

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Gene symbol
LOC112137885
Gene description
tectonic-1
See related
Ensembl:ENSOMEG00000020312
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
tctn1
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Genomic context

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Location:
chromosome: LG10
Exon count:
14
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG10 NC_050521.1 (26395246..26402659)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096110.1 (2993140..3000371, complement)

Linkage Group LG10 - NC_050521.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112137905 Neighboring gene uncharacterized LOC112137906 Neighboring gene snRNA-activating protein complex subunit 1 Neighboring gene ADP-ribosylation factor-like 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MKS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tectonic-1
Names
tectonic family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050521.1 Reference ASM292280v2 Primary Assembly

    Range
    26395246..26402659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024260419.2 → XP_024116187.1  tectonic-1 isoform X2

    Conserved Domains (1) summary
    pfam07773
    Location:94 → 409
    DUF1619; Protein of unknown function (DUF1619)

  2. XM_024260418.2 → XP_024116186.1  tectonic-1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3DX00, A0A834CE25
    Related
    ENSOMEP00000033984.1
    Conserved Domains (1) summary
    pfam07773
    Location:94 → 409
    DUF1619; Protein of unknown function (DUF1619)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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