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itgb8 integrin, beta 8 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112137373, updated on 15-Mar-2024

Summary

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Gene symbol
itgb8
Gene description
integrin, beta 8
See related
Ensembl:ENSOMEG00000015733
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG11
Exon count:
15
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG11 NC_050522.1 (9517418..9537756)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096076.1 (4624595..4645350)

Linkage Group LG11 - NC_050522.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase I subunit F Neighboring gene transmembrane protein 196 Neighboring gene sp8 transcription factor a Neighboring gene sp4 transcription factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-8
Names
integrin subunit beta 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050522.1 Reference ASM292280v2 Primary Assembly

    Range
    9517418..9537756
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024259675.2 → XP_024115443.1  integrin beta-8

    UniProtKB/TrEMBL
    A0A3B3C8U9, A0A3B3CAZ2
    Related
    ENSOMEP00000014252.1
    Conserved Domains (2) summary
    pfam07974
    Location:577 → 607
    EGF_2; EGF-like domain
    cl00057
    Location:41 → 459
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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