U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

palb2 partner and localizer of BRCA2 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112137372, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
palb2
Gene description
partner and localizer of BRCA2
See related
Ensembl:ENSOMEG00000020024
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG1
Exon count:
12
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG1 NC_050512.1 (11480635..11488501, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096108.1 (4678834..4686691)

Linkage Group LG1 - NC_050512.1Genomic Context describing neighboring genes Neighboring gene fascin Neighboring gene polo-like kinase 1 (Drosophila) Neighboring gene retinol dehydrogenase 8 Neighboring gene collagen, type V, alpha 3b Neighboring gene uncharacterized LOC112137414

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
partner and localizer of BRCA2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050512.1 Reference ASM292280v2 Primary Assembly

    Range
    11480635..11488501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024259671.2 → XP_024115439.1  partner and localizer of BRCA2

    UniProtKB/TrEMBL
    A0A3B3CKF1
    Related
    ENSOMEP00000018327.1
    Conserved Domains (1) summary
    pfam16756
    Location:909 → 1255
    PALB2_WD40; Partner and localizer of BRCA2 WD40 domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.