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LOC112117831 high mobility group protein B1 [ Terrapene carolina triunguis (Three-toed box turtle) ]

Gene ID: 112117831, updated on 28-Dec-2023

Summary

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Gene symbol
LOC112117831
Gene description
high mobility group protein B1
See related
Ensembl:ENSTMTG00000017266
Gene type
protein coding
RefSeq status
MODEL
Organism
Terrapene carolina triunguis (sub-species: triunguis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
Also known as
HMGB1
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020664490.1 (6510160..6519218, complement)
100 previous assembly T_m_triunguis-1.0 (GCF_002925995.1) Unplaced Scaffold NW_019962689.1 (14785..23850, complement)

NW_020664490.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-like protein 3 Neighboring gene katanin p60 ATPase-containing subunit A-like 1 Neighboring gene SUMO-specific isopeptidase USPL1 Neighboring gene transfer RNA valine (anticodon AAC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein B1
Names
high mobility group box 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T_m_triunguis-2.0

Genomic

  1. NW_020664490.1 Reference T_m_triunguis-2.0

    Range
    6510160..6519218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024215910.1 → XP_024071678.1  high mobility group protein B1

    UniProtKB/TrEMBL
    A0A674JX09
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:6 → 78
    HMG_box_2; HMG-box domain

  2. XM_024215908.3 → XP_024071676.1  high mobility group protein B1

    UniProtKB/TrEMBL
    A0A674JX09
    Related
    ENSTMTP00000023669.1, ENSTMTT00000024506.1
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:6 → 78
    HMG_box_2; HMG-box domain
Nucleotide Protein
Heading Accession and Version

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