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MBD4 methyl-CpG binding domain 4, DNA glycosylase [ Terrapene carolina triunguis (Three-toed box turtle) ]

Gene ID: 112111905, updated on 15-Mar-2024

Summary

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Gene symbol
MBD4
Gene description
methyl-CpG binding domain 4, DNA glycosylase
See related
Ensembl:ENSTMTG00000019713
Gene type
protein coding
RefSeq status
MODEL
Organism
Terrapene carolina triunguis (sub-species: triunguis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
Orthologs
human mouse all
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Genomic context

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See MBD4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020664440.1 (17093335..17102285, complement)
100 previous assembly T_m_triunguis-1.0 (GCF_002925995.1) Unplaced Scaffold NW_019961071.1 (178197..187428, complement)

NW_020664440.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA7 Neighboring gene ribosomal protein L32 Neighboring gene EF-hand calcium binding domain 12 Neighboring gene intraflagellar transport 122 Neighboring gene rhodopsin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyrimidine-specific mismatch base pair DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methyl-CpG-binding domain protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T_m_triunguis-2.0

Genomic

  1. NW_020664440.1 Reference T_m_triunguis-2.0

    Range
    17093335..17102285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024207552.3 → XP_024063320.1  methyl-CpG-binding domain protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A674JYT7
    Conserved Domains (2) summary
    smart00391
    Location:67 → 140
    MBD; Methyl-CpG binding domain
    cl23768
    Location:424 → 489
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

  2. XM_024207549.3 → XP_024063317.1  methyl-CpG-binding domain protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A674JYT7
    Conserved Domains (2) summary
    smart00391
    Location:67 → 140
    MBD; Methyl-CpG binding domain
    cl23768
    Location:449 → 514
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

  3. XM_024207550.1 → XP_024063318.1  methyl-CpG-binding domain protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A674JYT7, A0A674K6P5
    Related
    ENSTMTP00000026974.1, ENSTMTT00000027951.1
    Conserved Domains (2) summary
    smart00391
    Location:62 → 135
    MBD; Methyl-CpG binding domain
    cl23768
    Location:444 → 509
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

  4. XM_024207551.1 → XP_024063319.1  methyl-CpG-binding domain protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A674JYT7
    Conserved Domains (2) summary
    smart00391
    Location:50 → 123
    MBD; Methyl-CpG binding domain
    cl23768
    Location:432 → 497
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Nucleotide Protein
Heading Accession and Version

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