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SOX21 SRY-box transcription factor 21 [ Terrapene carolina triunguis (Three-toed box turtle) ]

Gene ID: 112103802, updated on 15-Mar-2024

Summary

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Gene symbol
SOX21
Gene description
SRY-box transcription factor 21
See related
Ensembl:ENSTMTG00000020923
Gene type
protein coding
RefSeq status
MODEL
Organism
Terrapene carolina triunguis (sub-species: triunguis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020664372.1 (19896265..19897095, complement)
100 previous assembly T_m_triunguis-1.0 (GCF_002925995.1) Unplaced Scaffold NW_019959348.1 (2220931..2221761)

NW_020664372.1Genomic Context describing neighboring genes Neighboring gene TDP-glucose 4,6-dehydratase Neighboring gene G protein-coupled receptor 180 Neighboring gene ATP binding cassette subfamily C member 4 (PEL blood group) Neighboring gene claudin 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-21
Names
SRY-box 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T_m_triunguis-2.0

Genomic

  1. NW_020664372.1 Reference T_m_triunguis-2.0

    Range
    19896265..19897095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024195738.2 → XP_024051506.1  transcription factor SOX-21 isoform X2

    Conserved Domains (2) summary
    cd01388
    Location:7 → 78
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12336
    Location:77 → 95
    SOXp; SOX transcription factor

  2. XM_024195737.2 → XP_024051505.1  transcription factor SOX-21 isoform X1

    UniProtKB/TrEMBL
    A0A674K5B5
    Related
    ENSTMTP00000028855.1, ENSTMTT00000029906.1
    Conserved Domains (2) summary
    cd01388
    Location:7 → 78
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12336
    Location:77 → 95
    SOXp; SOX transcription factor
Nucleotide Protein
Heading Accession and Version

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