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TENM1 teneurin transmembrane protein 1 [ Terrapene carolina triunguis (Three-toed box turtle) ]

Gene ID: 112103650, updated on 15-Mar-2024

Summary

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Gene symbol
TENM1
Gene description
teneurin transmembrane protein 1
See related
Ensembl:ENSTMTG00000012450
Gene type
protein coding
RefSeq status
MODEL
Organism
Terrapene carolina triunguis (sub-species: triunguis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020664482.1 (14367000..14750457, complement)
100 previous assembly T_m_triunguis-1.0 (GCF_002925995.1) Unplaced Scaffold NW_019958511.1 (1908196..2292748, complement)

NW_020664482.1Genomic Context describing neighboring genes Neighboring gene STAG2 cohesin complex component Neighboring gene SH2 domain containing 1A Neighboring gene uncharacterized LOC112108581 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
teneurin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T_m_triunguis-2.0

Genomic

  1. NW_020664482.1 Reference T_m_triunguis-2.0

    Range
    14367000..14750457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029911855.1 → XP_029767715.1  teneurin-1

    UniProtKB/TrEMBL
    A0A674J8B4, A0A674JDV4
    Related
    ENSTMTP00000017539.1, ENSTMTT00000018157.1
    Conserved Domains (9) summary
    COG3209
    Location:1826 → 2368
    RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]
    cd00054
    Location:736 → 769
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd05819
    Location:1171 → 1210
    NHL; NHL repeat [structural motif]
    pfam07974
    Location:514 → 540
    EGF_2; EGF-like domain
    cl18310
    Location:1142 → 1502
    NHL; NHL repeat unit of beta-propeller proteins
    pfam01500
    Location:578 → 714
    Keratin_B2; Keratin, high sulfur B2 protein
    pfam05593
    Location:1614 → 1652
    RHS_repeat; RHS Repeat
    pfam06484
    Location:23 → 299
    Ten_N; Teneurin Intracellular Region
    pfam15636
    Location:2622 → 2699
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
Nucleotide Protein
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