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    CHKB choline kinase beta [ Homo sapiens (human) ]

    Gene ID: 1120, updated on 15-Jun-2013
    Official Symbol
    CHKBprovided by HGNC
    Official Full Name
    choline kinase betaprovided by HGNC
    Primary source
    HGNC:1938
    See related
    Ensembl:ENSG00000100288; HPRD:07631; MIM:612395; Vega:OTTHUMG00000150275
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CK; EK; CKB; EKB; CHKL; CHETK; CKEKB; MDCMC
    Summary
    Choline kinase (CK) and ethanolamine kinase (EK) catalyze the phosphorylation of choline/ethanolamine to phosphocholine/phosphoethanolamine. This is the first enzyme in the biosynthesis of phosphatidylcholine/phosphatidylethanolamine in all animal cells. The highly purified CKs from mammalian sources and their recombinant gene products have been shown to have EK activity also, indicating that both activities reside on the same protein. The choline kinase-like protein encoded by CHKL belongs to the choline/ethanolamine kinase family; however, its exact function is not known. Read-through transcripts are expressed from this locus that include exons from the downstream CPT1B locus. [provided by RefSeq, Jun 2009]
    Location :
    22q13.33
    Sequence :
    Chromosome: 22; NC_000022.10 (51017387..51021428, complement)
    See CHKB in Epigenomics, MapViewer

    Chromosome 22 - NC_000022.10Genomic Context describing neighboring genes Neighboring gene synaptonemal complex central element protein 3 Neighboring gene CHKB-CPT1B readthrough (NMD candidate) Neighboring gene carnitine palmitoyltransferase 1B (muscle) Neighboring gene CHKB antisense RNA 1 (head to head) Neighboring gene mitogen-activated protein kinase 8 interacting protein 2

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Muscular dystrophy, congenital, megaconial type

    Summary from GeneReviews: Congenital Muscular Dystrophy Overview Go to GeneReviews

    Disease Characteristics
    Congenital muscular dystrophy (CMD) is a clinically and genetically heterogeneous group of inherited muscle disorders. Muscle weakness typically presents from birth to early infancy. Affected infants typically appear "floppy" with low muscle tone and poor spontaneous movements. Affected children may present with delay or arrest of gross motor development together with joint and/or spinal rigidity. Muscle weakness may improve, worsen, or stabilize in the short term; however, with time progressive weakness and joint contractures, spinal deformities, and respiratory compromise may affect quality of life and life span. The main CMD subtypes, grouped by involved protein function and gene in which causative mutations occur, are laminin alpha-2 (merosin) deficiency (MDC1A), collagen VI-deficient CMD, the dystroglycanopathies (caused by mutations in POMT1, POMT2, FKTN, FKRP, LARGE, POMGNT1, and ISPD), SEPN1-related CMD (previously known as rigid spine syndrome, RSMD1) and LMNA-related CMD (L-CMD). Several less known CMD subtypes have been reported in a limited number of individuals. Cognitive impairment ranging from intellectual disability to mild cognitive delay, structural brain and/or eye abnormalities, and seizures are found almost exclusively in the dystroglycanopathies while white matter abnormalities without major cognitive involvement tend to be seen in the laminin alpha-2-deficient subtype.
    Diagnosis Testing
    The diagnosis of congenital muscular dystrophy relies on clinical findings, brain and muscle imaging, muscle biopsy histology (dystrophic features without the hallmarks of the structural changes seen in the congenital myopathies), muscle and/or skin immunohistochemical staining, and molecular genetic testing.
    Genetic Counseling
    The congenital muscular dystrophies are inherited in an autosomal recessive manner with the exception of collagen VI-deficient CMD which may be inherited in an autosomal recessive or an autosomal dominant manner and LMNA-related CMD (L-CMD) which is inherited in an autosomal dominant manner with all cases to date caused by de novo mutation. In autosomal recessive subtypes, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carriers are asymptomatic. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations in the family are known. In autosomal dominant subtypes, the offspring of affected individuals have a 50% chance of being affected. The risk to sibs of an individual with an apparently de novo mutation is low, but not zero because of the possibility of germline mosaicism in one of the parents. Prenatal testing for pregnancies at increased risk is possible for families in which the disease-causing mutation has been identified.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:107544 BioGRID:106715 ALB    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Readthrough CHKB-CPT1B

    Readthrough gene: CHKB-CPT1B, Included gene: CPT1B

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    choline kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ethanolamine kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    CDP-choline pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    glycerophospholipid biosynthetic process TAS
    Traceable Author Statement
    more info
     
    phosphatidylcholine biosynthetic process TAS
    Traceable Author Statement
    more info
     
    phosphatidylethanolamine biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    phosphatidylethanolamine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidylethanolamine biosynthetic process TAS
    Traceable Author Statement
    more info
     
    phospholipid metabolic process TAS
    Traceable Author Statement
    more info
     
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
     
    cytosol TAS
    Traceable Author Statement
    more info
     
    Preferred Names
    choline/ethanolamine kinase
    Names
    choline/ethanolamine kinase
    ethanolamine kinase beta
    choline kinase-like protein
    NP_005189.2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029213.1 RefSeqGene

      Range
      5001..9042
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_005198.4NP_005189.2  choline/ethanolamine kinase

      Status: REVIEWED

      Source sequence(s)
      AB029886, BE676287, DB106393
      Consensus CDS
      CCDS14099.1
      UniProtKB/Swiss-Prot
      Q9Y259
      Related
      ENSP00000384400, OTTHUMP00000196839, ENST00000406938, OTTHUMT00000317267
      Conserved Domains (2) summary
      cd05156
      Location:69360
      Blast Score: 899
      ChoK_euk; Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), ...
      PLN02236
      Location:57388
      Blast Score: 586
      PLN02236; choline kinase

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000022.10 Reference GRCh37.p10 Primary Assembly

      Range
      51017387..51021428, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000154.1 Alternate HuRef

      Range
      33908386..33912427, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018933.1 Alternate CHM1_1.0

      Range
      34960390..34964431, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_152253.1: Suppressed sequence

      Description
      NM_152253.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.

      Supplemental Content

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